References

Benisty, H., Song, A., Mishne, G., & Charles, A. S. (2022). Review of data processing of functional optical microscopy for neuroscience. Neurophotonics, 9(4), 041402. https://doi.org/10.1117/1.NPh.9.4.041402
Couto, J., Musall, S., Sun, X. R., Khanal, A., Gluf, S., Saxena, S., Kinsella, I., Abe, T., Cunningham, J. P., Paninski, L., & Churchland, A. K. (2021). Chronic, cortex-wide imaging of specific cell populations during behavior. Nature protocols, 16(7), 3241–3263. https://doi.org/10.1038/s41596-021-00527-z
Edelstein, A. D., Tsuchida, M. A., Amodaj, N., Pinkard, H., Vale, R. D., & Stuurman, N. (2014). Advanced methods of microscope control using μManager software. Journal of biological methods, 1(2), e10. https://doi.org/10.14440/jbm.2014.36
Nietz, A. K., Popa, L. S., Streng, M. L., Carter, R. E., Kodandaramaiah, S. B., & Ebner, T. J. (2022). Wide-Field Calcium Imaging of Neuronal Network Dynamics In Vivo. Biology, 11(11), 1601. https://doi.org/10.3390/biology11111601
Ratzlaff, E. H., & Grinvald, A. (1991). A tandem-lens epifluorescence macroscope: hundred-fold brightness advantage for wide-field imaging. Journal of neuroscience methods, 36(2-3), 127-137. Tandem Lense OG paper
PycroManager Pycro-Manager Nature Paper
The Zen of Python

🔬 Sipe Lab