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Operations
GlassNest
+alpha
+tango
+Trapdoor
+wilko
=GlassNest
Quick Reference
Mesofield
Computers
Mesofield Computer
Widefield Computer
Instruments
Cameras
Arducam
Dhyana 400BSI V2
Thorlabs CS165 MU
Control Boards
NI-DAQ
NI USB-6001
Arduino
Lenses
Nikon 105mm f2 AF DC Nikkor
Nikon AF-S Nikkor 50mm
Nikon AF-S Nikkor 105mm
Tandem Lenses
NI-DAQ
NI USB-6001
Screens
Vis Stim Screen
Arduino
Tandem Lenses
Treadmill
Python
Python Packages
image-sc-forum
Potential Packages
PycroManager
pymmcore-plus
Python Scripts
=scripts
NIDAQ ai-di-do continuous
ThorLabs-continuous-capture
Scientific Image Acquisition
Global-Shutter vs. Rolling-Shutter Readouts
Hardware-triggering with Micro-Manager a case study
Software
Analysis GUI
AutoHotkey
DeepLabCut
Loading videos into Mesofield
MicroManager
Napari
PsychoPy
Stage Equipment
Calibration
LEDD1B T-Cube
MCM3002 Control Knobs
Rotary Encoder
Stage Equipment
XYZ Stage Control
System Design Scheme
Add Note
Background Information
ImageViewer
napari-mesofield
Record
References
Calibration
Widefield Mesoscope Part List
Projects
Mesofield
Mesofield ROI Analysis
Index of /informatics-archive/current-release/mouse_ccf
Projection Dataset - How To / Allen Mouse Brain Connectivity Atlas - Allen Brain Map Community Forum
ExperimentConfigBase(ABC) Class implementation
Loading videos into Mesofield
Refactoring ConfigController for Dynamic GUI Components
Virtual Reality Feedback
Panda3D
Event Handlers — Panda3D Manual
how to get OS resolution? - General Discussion - Panda3D
Mouse Portal
UPBGE
Analysis GUI
ExperimentConfigBase(ABC) Class implementation
Pandas MultiIndex
Pass Python object to Subprocess
Resources
Arduino
Two ways communication between Python3 and Arduino - Projects / Tutorials - Arduino Forum
Clippings
Time Synchronization
Barcode Generation
Synchronizing Data Streams — Open Ephys GUI Docs
syntalos/syntalos: Synchronized data acquisition from diverse sources and flexible control for behavior experiments
Global-Shutter vs. Rolling-Shutter Readouts
Physiological parameters mouse
Scientific Data Analysis Pipelines and Reproducibility
Structuring Your Project — The Hitchhiker's Guide to Python
Data Management
Data Analysis Pipelines
OME Data Model
Opening the Tiff Stacks in Python
Development Environment
Guiding Principles
Github Repository
ChatGPT
Conventional Commits
Git
Quick Project Template
Semantic Versioning 2.0.0
Setup a Github Repository
Structuring Your Project — The Hitchhiker's Guide to Python
docs
System Design Scheme
Add Note
ImageViewer
Record
Background Information
Hardware-triggering with Micro-Manager a case study
Mesofield environment setup
napari-mesofield
OME Data Model
Opening the Tiff Stacks in Python
Psychopy autorun
Quick Reference
References
Shopping list
sipefield environment setup
Guiding Principles
Conventional Commits
Github Repository
Image Data
Open Microscopy Environment OME Schema
Opening the Tiff Stacks in Python
Python
Debugging
How to Visualize your Python Project’s Dependency Graph - Gauge - Solving the monolith/microservices dilemma
Python Performance Profiling Using PySpy
Python Packages
CuPy
image-sc-forum
Potential Packages
PycroManager
pymmcore-plus
Python Principles
Structuring Your Project — The Hitchhiker's Guide to Python
Python Scripts
=scripts
NIDAQ ai-di-do continuous
ThorLabs-continuous-capture
Python OpenCV: Capture Video from Camera - GeeksforGeeks
Scientific Image Acquisition
Image Data
Open Microscopy Environment OME Schema
Opening the Tiff Stacks in Python
Global-Shutter vs. Rolling-Shutter Readouts
Hardware-triggering with Micro-Manager a case study
Software
AutoHotkey
DeepLabCut
MicroManager
Napari
PsychoPy
ArduCam Windows Setup
DeepLabCut
Hardware-triggering with Micro-Manager a case study
Sipe Lab Dev Environment
Home
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Mesofield
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System Design Scheme
Folder: Mesofield/System-Design-Scheme
6 items under this folder.
Apr 28, 2025
Add Note
Apr 28, 2025
Background Information
Apr 28, 2025
ImageViewer
Apr 28, 2025
Record
Apr 28, 2025
References
Apr 28, 2025
napari-mesofield